Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs115569960 chr2:180848214 C/T 0.000131 173 22.57 20.93 13.63 KM Plot
UCEC rs11592181 chr10:51582686 A/G 5.66E-5 174 23.53 24.07 22.57 KM Plot
UCEC rs11597667 chr10:51586514 A/T 1.34E-5 174 22.08 23.48 13.97 KM Plot
UCEC rs116184564 chr3:47895834 C/T 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs116246588 chr5:77683144 T/G 5.99E-5 169 21.55 25.3 16.3 KM Plot
UCEC rs11627333 chr14:73213835 G/T 7.86E-5 174 23.97 19.17 13.93 KM Plot
UCEC rs11658895 chr17:45824163 T/C 3.34E-5 172 23.82 21.07 12.2 KM Plot
UCEC rs116671432 chr3:48010308 G/C 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs116734961 chr7:64178406 T/G 0 174 22.57 21.98 2.4 KM Plot
UCEC rs11684889 chr2:219077196 T/C 0.000133 173 4.5 17.53 22.85 KM Plot
UCEC rs116960145 chr16:3696234 A/G 9.84E-12 170 22.57 22.63 2.3 KM Plot
UCEC rs11741640 chr5:176792743 G/A 9.23E-7 171 21.07 27.43 14.8 KM Plot
UCEC rs11744479 chr5:77729220 T/G 7.37E-5 170 18.37 26.07 21.5 KM Plot
UCEC rs11746443 chr5:176798306 G/A 2.18E-5 167 21.08 26.9 14.97 KM Plot
UCEC rs11761598 chr7:20679471 A/G 9.52E-12 174 22.67 19.17 4.33 KM Plot